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SRX2778456: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Heidelberg by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 461,452 spots, 192.7M bases, 105.7Mb downloads

External Id: EXT00258428
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen bacterial, environmental sample from Salmonella enterica subsp. enterica serovar Heidelburg str. SARA35
SAMN01087969 • SRS387445 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Heidelberg str. SARA35
Library:
Name: Salmonella enterica subsp. enterica serovar Heidelberg Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Heidelberg.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 461,452 spots, 192.7M bases, 105.7Mb
Run# of Spots# of BasesSizePublished
SRR5498135461,452192.7M105.7Mb2017-05-02

ID:
4006456

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